Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0453 | DVU_2085 | DVU_0453 | DVU_2085 | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | 0.650 |
| DVU_0453 | dnaN | DVU_0453 | DVU_0002 | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | 0.911 |
| DVU_0453 | polA | DVU_0453 | DVU_0496 | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | DNA polymerase I; Identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | 0.878 |
| DVU_0453 | radA | DVU_0453 | DVU_1590 | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.598 |
| DVU_0453 | recA | DVU_0453 | DVU_1090 | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.878 |
| DVU_0453 | recN | DVU_0453 | DVU_2463 | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.428 |
| DVU_0453 | rpoB | DVU_0453 | DVU_2928 | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.667 |
| DVU_0453 | topA | DVU_0453 | DVU_3389 | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.836 |
| DVU_2085 | DVU_0453 | DVU_2085 | DVU_0453 | Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | 0.650 |
| DVU_2085 | dnaN | DVU_2085 | DVU_0002 | Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | 0.915 |
| DVU_2085 | polA | DVU_2085 | DVU_0496 | Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | DNA polymerase I; Identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | 0.982 |
| DVU_2085 | recA | DVU_2085 | DVU_1090 | Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.882 |
| DVU_2085 | rpoB | DVU_2085 | DVU_2928 | Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.971 |
| DVU_2085 | topA | DVU_2085 | DVU_3389 | Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.793 |
| alaS | recA | DVU_1089 | DVU_1090 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.898 |
| alaS | rpoB | DVU_1089 | DVU_2928 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.636 |
| dnaN | DVU_0453 | DVU_0002 | DVU_0453 | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | 0.911 |
| dnaN | DVU_2085 | DVU_0002 | DVU_2085 | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | Identified by match to protein family HMM PF00176; match to protein family HMM PF00271. | 0.915 |
| dnaN | polA | DVU_0002 | DVU_0496 | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | DNA polymerase I; Identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | 0.996 |
| dnaN | radA | DVU_0002 | DVU_1590 | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.796 |
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