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DVU_1092 DVU_1092 DVU_2210 DVU_2210 DVU_2206 DVU_2206 DVU_1235 DVU_1235 aspB aspB DVU_1214 DVU_1214 DVU_3190 DVU_3190 DVU_3230 DVU_3230 DVU_2394 DVU_2394 ispG ispG DVU_1091 DVU_1091
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1092Identified by similarity to SP:P45320; match to protein family HMM PF00209. (453 aa)    
Predicted Functional Partners:
DVU_2210
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF02624; match to protein family HMM TIGR00702.
   
 
 0.575
DVU_2206
Conserved hypothetical protein.
     
 0.568
DVU_1235
Hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.563
aspB
Aspartate aminotransferase; Identified by similarity to SP:P23034; match to protein family HMM PF00155.
   
  
 0.563
DVU_1214
Identified by match to protein family HMM PF02366.
   
  
 0.561
DVU_3190
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.557
DVU_3230
Flagellar synthesis regulator FleN; Identified by similarity to OMNI:NTL03PA01455; match to protein family HMM PF00991.
      
 0.557
DVU_2394
Sigma-54 dependent transcriptional regulator/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
      
 0.554
ispG
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
     
 0.527
DVU_1091
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP2210.
       0.478
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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