STRINGSTRING
DVU_1101 DVU_1101 DVU_1100 DVU_1100 DVU_1099 DVU_1099 DVU_1103 DVU_1103 DVU_1105 DVU_1105 DVU_1104 DVU_1104 DVU_1102 DVU_1102
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1101Hypothetical protein; Identified by Glimmer2; putative. (218 aa)    
Predicted Functional Partners:
DVU_1100
Tail fiber protein, putative.
       0.780
DVU_1099
Tail fiber assembly protein, putative.
       0.755
DVU_1103
Baseplate assembly protein, putative; Identified by match to protein family HMM PF04965.
       0.518
DVU_1105
Hypothetical protein; Identified by Glimmer2; putative.
       0.514
DVU_1104
Baseplate assembly protein, putative.
       0.513
DVU_1102
Baseplate assembly protein, putative.
       0.512
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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