STRINGSTRING
DVU_1118 DVU_1118 DVU_1116 DVU_1116 DVU_1120 DVU_1120 DVU_1119 DVU_1119 DVU_1114 DVU_1114 DVU_1122 DVU_1122 DVU_1139 DVU_1139 DVU_1117 DVU_1117 DVU_1140 DVU_1140 DVU_2707 DVU_2707 DVU_1125 DVU_1125
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1118Conserved hypothetical protein; Identified by similarity to OMNI:NTL03ST1420. (316 aa)    
Predicted Functional Partners:
DVU_1116
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.929
DVU_1120
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03ST1417.
 
    0.904
DVU_1119
Virion morphogenesis protein; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.
 
    0.882
DVU_1114
Virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635.
 
    0.874
DVU_1122
Portal protein, putative.
 
    0.846
DVU_1139
Bacteriophage DNA transposition B protein, putative; Identified by similarity to GP:974770.
 
    0.825
DVU_1117
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.804
DVU_1140
Bacteriophage transposase A protein, putative; Identified by similarity to SP:P07636.
 
    0.804
DVU_2707
Virion morphogenesis protein; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.
 
    0.799
DVU_1125
Conserved domain protein; Identified by similarity to GP:5531665.
  
    0.787
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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