STRINGSTRING
DVU_1122 DVU_1122 DVU_1120 DVU_1120 DVU_1119 DVU_1119 DVU_1139 DVU_1139 DVU_1118 DVU_1118 DVU_1140 DVU_1140 DVU_1114 DVU_1114 DVU_2695 DVU_2695 DVU_2710 DVU_2710 DVU_2711 DVU_2711 DVU_2713 DVU_2713
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1122Portal protein, putative. (494 aa)    
Predicted Functional Partners:
DVU_1120
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03ST1417.
 
    0.885
DVU_1119
Virion morphogenesis protein; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.
 
    0.879
DVU_1139
Bacteriophage DNA transposition B protein, putative; Identified by similarity to GP:974770.
 
    0.848
DVU_1118
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03ST1420.
 
    0.846
DVU_1140
Bacteriophage transposase A protein, putative; Identified by similarity to SP:P07636.
 
    0.839
DVU_1114
Virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635.
 
    0.828
DVU_2695
Conserved hypothetical protein.
 
    0.815
DVU_2710
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NM01727.
 
    0.808
DVU_2711
Major head subunit, putative; Identified by similarity to SP:Q9T1W1.
 
    0.807
DVU_2713
Conserved hypothetical protein.
 
    0.805
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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