STRINGSTRING
DVU_1129 DVU_1129 DVU_1128 DVU_1128 DVU_1125 DVU_1125 DVU_1126 DVU_1126 DVU_1127 DVU_1127 DVU_1124 DVU_1124 DVU_1131 DVU_1131 DVU_1123 DVU_1123 DVU_1133 DVU_1133 DVU_1132 DVU_1132 DVU_1130 DVU_1130
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1129Conserved hypothetical protein; Identified by similarity to OMNI:NTL03ST1409. (122 aa)    
Predicted Functional Partners:
DVU_1128
Lysozyme, putative; Identified by match to protein family HMM PF01464.
  
    0.907
DVU_1125
Conserved domain protein; Identified by similarity to GP:5531665.
  
    0.813
DVU_1126
Lipoprotein, putative.
  
    0.786
DVU_1127
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.783
DVU_1124
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
DVU_1131
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.673
DVU_1123
Conserved domain protein; Identified by similarity to GP:1772508.
  
    0.666
DVU_1133
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.656
DVU_1132
Conserved hypothetical protein; Identified by similarity to OMNI:NMB0985.
  
    0.626
DVU_1130
DNA-binding protein.
  
    0.610
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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