STRINGSTRING
DVU_1135 DVU_1135 DVU_1137 DVU_1137 DVU_1136 DVU_1136 DVU_1139 DVU_1139 hupB hupB DVU_1138 DVU_1138 DVU_1140 DVU_1140 DVU_1133 DVU_1133 DVU_1130 DVU_1130 DVU_1132 DVU_1132 DVU_1131 DVU_1131
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1135Conserved domain protein; Identified by similarity to GP:14277814. (79 aa)    
Predicted Functional Partners:
DVU_1137
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.887
DVU_1136
Host-nuclease inhibitor protein Gam, putative; Identified by similarity to SP:P06023.
  
    0.793
DVU_1139
Bacteriophage DNA transposition B protein, putative; Identified by similarity to GP:974770.
  
    0.784
hupB
DNA-binding protein HU, beta subunit; Identified by similarity to SP:P02346; match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family.
  
    0.772
DVU_1138
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.755
DVU_1140
Bacteriophage transposase A protein, putative; Identified by similarity to SP:P07636.
  
    0.741
DVU_1133
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.583
DVU_1130
DNA-binding protein.
  
    0.579
DVU_1132
Conserved hypothetical protein; Identified by similarity to OMNI:NMB0985.
  
    0.573
DVU_1131
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.570
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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