Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0366 | DVU_1213 | DVU_0366 | DVU_1213 | Identified by match to protein family HMM PF01812; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | Identified by match to protein family HMM PF01694. | 0.630 |
| DVU_1213 | DVU_0366 | DVU_1213 | DVU_0366 | Identified by match to protein family HMM PF01694. | Identified by match to protein family HMM PF01812; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | 0.630 |
| DVU_1213 | DVU_1826 | DVU_1213 | DVU_1826 | Identified by match to protein family HMM PF01694. | Hypothetical protein; Identified by Glimmer2; putative. | 0.612 |
| DVU_1213 | DVU_2371 | DVU_1213 | DVU_2371 | Identified by match to protein family HMM PF01694. | N-acetylmuramoyl-L-alanine amidase, putative; Identified by match to protein family HMM PF01520. | 0.756 |
| DVU_1213 | DVU_2879 | DVU_1213 | DVU_2879 | Identified by match to protein family HMM PF01694. | Conserved hypothetical protein; Identified by similarity to OMNI:CC3049. | 0.505 |
| DVU_1213 | DVU_3274 | DVU_1213 | DVU_3274 | Identified by match to protein family HMM PF01694. | Hypothetical protein; Identified by Glimmer2; putative. | 0.525 |
| DVU_1213 | DVU_3362 | DVU_1213 | DVU_3362 | Identified by match to protein family HMM PF01694. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH0861. | 0.527 |
| DVU_1213 | fsxA | DVU_1213 | DVU_1212 | Identified by match to protein family HMM PF01694. | fxsA protein; Identified by similarity to SP:P37147; match to protein family HMM PF04186. | 0.776 |
| DVU_1213 | tatA | DVU_1213 | DVU_1367 | Identified by match to protein family HMM PF01694. | Twin-arginine translocation protein, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.625 |
| DVU_1213 | tatA-2 | DVU_1213 | DVU_2450 | Identified by match to protein family HMM PF01694. | Conserved hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.625 |
| DVU_1213 | tatB | DVU_1213 | DVU_1042 | Identified by match to protein family HMM PF01694. | Twin-arginine translocation protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.625 |
| DVU_1826 | DVU_1213 | DVU_1826 | DVU_1213 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM PF01694. | 0.612 |
| DVU_2371 | DVU_1213 | DVU_2371 | DVU_1213 | N-acetylmuramoyl-L-alanine amidase, putative; Identified by match to protein family HMM PF01520. | Identified by match to protein family HMM PF01694. | 0.756 |
| DVU_2879 | DVU_1213 | DVU_2879 | DVU_1213 | Conserved hypothetical protein; Identified by similarity to OMNI:CC3049. | Identified by match to protein family HMM PF01694. | 0.505 |
| DVU_3274 | DVU_1213 | DVU_3274 | DVU_1213 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM PF01694. | 0.525 |
| DVU_3362 | DVU_1213 | DVU_3362 | DVU_1213 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH0861. | Identified by match to protein family HMM PF01694. | 0.527 |
| fsxA | DVU_1213 | DVU_1212 | DVU_1213 | fxsA protein; Identified by similarity to SP:P37147; match to protein family HMM PF04186. | Identified by match to protein family HMM PF01694. | 0.776 |
| tatA | DVU_1213 | DVU_1367 | DVU_1213 | Twin-arginine translocation protein, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Identified by match to protein family HMM PF01694. | 0.625 |
| tatA | tatA-2 | DVU_1367 | DVU_2450 | Twin-arginine translocation protein, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Conserved hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.900 |
| tatA | tatB | DVU_1367 | DVU_1042 | Twin-arginine translocation protein, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Twin-arginine translocation protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.981 |
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