STRINGSTRING
DVU_1219 DVU_1219 DVU_2280 DVU_2280 glgA glgA DVU_3163 DVU_3163 DVU_2349 DVU_2349 DVU_1218 DVU_1218 malQ malQ sucCD sucCD DVU_3164 DVU_3164 DVU_0938 DVU_0938 glgB glgB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1219Conserved hypothetical protein; Identified by similarity to GP:6724082. (731 aa)    
Predicted Functional Partners:
DVU_2280
Amino acid permease family protein; Identified by match to protein family HMM PF00324.
   
 0.981
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
  
 0.768
DVU_3163
ABC transporter, permease protein; Identified by similarity to OMNI:NTL01LI0216; match to protein family HMM PF00528.
  
  
 0.711
DVU_2349
Identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094.
  
 
 0.670
DVU_1218
Conserved hypothetical protein; Identified by similarity to SP:Q58452; match to protein family HMM PF01910; match to protein family HMM TIGR00106.
  
    0.617
malQ
4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217.
  
  
 0.592
sucCD
succinyl-CoA synthase, beta/alpha subunits; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
  
  
 0.579
DVU_3164
ABC transporter, permease protein; Identified by similarity to OMNI:TM0598; match to protein family HMM PF00528.
  
  
 0.579
DVU_0938
Isoamylase N-terminal domain protein.
  
  
 0.565
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
  
 0.565
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.