Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_1234 | glnB-1 | DVU_1234 | DVU_1232 | Membrane protein, putative; Identified by match to protein family HMM PF01925. | Nitrogen regulatory protein P-II; Identified by similarity to SP:P21193; match to protein family HMM PF00543; Belongs to the P(II) protein family. | 0.452 |
| DVU_1234 | glnD | DVU_1234 | DVU_1233 | Membrane protein, putative; Identified by match to protein family HMM PF01925. | protein-P-II uridylyltransferase, putative; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. | 0.570 |
| glnB-1 | DVU_1234 | DVU_1232 | DVU_1234 | Nitrogen regulatory protein P-II; Identified by similarity to SP:P21193; match to protein family HMM PF00543; Belongs to the P(II) protein family. | Membrane protein, putative; Identified by match to protein family HMM PF01925. | 0.452 |
| glnB-1 | glnD | DVU_1232 | DVU_1233 | Nitrogen regulatory protein P-II; Identified by similarity to SP:P21193; match to protein family HMM PF00543; Belongs to the P(II) protein family. | protein-P-II uridylyltransferase, putative; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. | 0.998 |
| glnD | DVU_1234 | DVU_1233 | DVU_1234 | protein-P-II uridylyltransferase, putative; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. | Membrane protein, putative; Identified by match to protein family HMM PF01925. | 0.570 |
| glnD | glnB-1 | DVU_1233 | DVU_1232 | protein-P-II uridylyltransferase, putative; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. | Nitrogen regulatory protein P-II; Identified by similarity to SP:P21193; match to protein family HMM PF00543; Belongs to the P(II) protein family. | 0.998 |