STRINGSTRING
DVU_1241 DVU_1241 DVU_0245 DVU_0245 DVU_0742 DVU_0742 DVU_2522 DVU_2522 DVU_0691 DVU_0691 DVU_1460 DVU_1460 DVU_0651 DVU_0651 DVU_1584 DVU_1584 DVU_2210 DVU_2210 DVU_1535 DVU_1535 rpoD rpoD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
DVU_1241Conserved hypothetical protein; Identified by similarity to OMNI:NTL01FN1126. (105 aa)    
Predicted Functional Partners:
DVU_0245
Protein phosphatase, putative; Identified by match to protein family HMM PF00782.
  
     0.658
DVU_0742
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.657
DVU_2522
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.646
DVU_0691
Membrane protein, putative.
  
     0.628
DVU_1460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.601
DVU_0651
Membrane protein, putative.
  
     0.593
DVU_1584
Sigma 70 family protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
 
 
 0.576
DVU_2210
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF02624; match to protein family HMM TIGR00702.
  
     0.559
DVU_1535
Membrane protein, putative; Identified by similarity to OMNI:NTL01TT0071.
 
    0.497
rpoD
RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth; Belongs to the sigma-70 factor family. RpoD/SigA subfamily.
   
 
 0.482
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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