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DVU_1245 DVU_1245 DVU_1246 DVU_1246 DVU_0612 DVU_0612 DVU_1244 DVU_1244 DVU_0610 DVU_0610 DVU_1243 DVU_1243 DVU_0611 DVU_0611 DVU_1671 DVU_1671 DVU_0484 DVU_0484 DVU_1431 DVU_1431 DVU_1995 DVU_1995
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1245ABC transporter, ATP-binding protein; Identified by similarity to SP:P45393; match to protein family HMM PF00005. (274 aa)    
Predicted Functional Partners:
DVU_1246
Membrane protein, putative; Identified by similarity to OMNI:NTL01AA00252; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
 0.999
DVU_0612
STAS domain protein; Identified by similarity to GP:9106294; match to protein family HMM PF01740; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
 0.994
DVU_1244
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS2960; match to protein family HMM PF02470.
 
 0.992
DVU_0610
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03213; match to protein family HMM PF02470.
 
 0.973
DVU_1243
Conserved hypothetical protein; Identified by similarity to GP:22799047.
  
 
 0.931
DVU_0611
ABC transporter, ATP-binding protein; Identified by similarity to GP:21109946; match to protein family HMM PF00005.
  
  
 
0.912
DVU_1671
ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
   
0.898
DVU_0484
ABC transporter, ATP-binding protein; Identified by similarity to SP:P38046; match to protein family HMM PF00005.
 
    
0.807
DVU_1431
Hpt domain protein/STAS domain protein; Identified by match to protein family HMM PF01627; match to protein family HMM PF01740.
   
   0.807
DVU_1995
Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
  
   0.754
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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