STRINGSTRING
DVU_1261 DVU_1261 DVU_2169 DVU_2169 DVU_0199 DVU_0199 DVU_2870 DVU_2870 DVU_1262 DVU_1262 DVU_1490 DVU_1490 DVU_2591 DVU_2591 DVU_1695 DVU_1695 DVU_1483 DVU_1483 DVU_1100 DVU_1100 DVU_2856 DVU_2856
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1261Conserved domain protein; Identified by similarity to SP:P45754. (586 aa)    
Predicted Functional Partners:
DVU_2169
Conserved hypothetical protein; Identified by similarity to GP:311850.
  
   0.891
DVU_0199
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
  
   0.890
DVU_2870
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
  
   0.889
DVU_1262
Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.
 
    0.813
DVU_1490
Tail tape measure protein, putative.
  
    0.791
DVU_2591
Tail fiber assembly protein, putative.
  
    0.691
DVU_1695
Tail fiber assembly protein, putative.
  
    0.684
DVU_1483
Tail fiber assembly protein, putative.
  
    0.683
DVU_1100
Tail fiber protein, putative.
  
    0.682
DVU_2856
Conserved domain protein; Identified by similarity to GP:915377.
  
    0.647
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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