STRINGSTRING
DVU_1266 DVU_1266 DVU_1272 DVU_1272 DVU_1271 DVU_1271 DVU_1268 DVU_1268 DVU_1267 DVU_1267 DVU_3257 DVU_3257 pppA pppA DVU_1273 DVU_1273 DVU_1269 DVU_1269 DVU_2069 DVU_2069 flgC flgC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Experiments
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[Homology]
Score
DVU_1266Hypothetical protein; Identified by Glimmer2; putative. (1145 aa)    
Predicted Functional Partners:
DVU_1272
General secretion pathway protein E, putative; Identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM PF05157.
 
 
 0.842
DVU_1271
General secretion pathway protein F, putative; Identified by similarity to GP:4139238; match to protein family HMM PF00482.
 
  
 0.838
DVU_1268
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.798
DVU_1267
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.775
DVU_3257
DNA internalization-related competence protein ComEC/Rec2; Identified by similarity to SP:P39695; match to protein family HMM TIGR00360.
  
  
 0.717
pppA
Type IV prepilin-like proteins leader peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.565
DVU_1273
Bacterial type II/III secretion system protein; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958.
 
  
 0.559
DVU_1269
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.555
DVU_2069
DNA processing protein DprA, putative; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.
  
  
 0.548
flgC
Flagellar basal-body rod protein FlgC; Identified by similarity to SP:P75935; match to protein family HMM PF00460; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.
   
   0.484
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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