STRINGSTRING
DVU_1268 DVU_1268 DVU_1272 DVU_1272 DVU_1271 DVU_1271 DVU_1266 DVU_1266 DVU_1267 DVU_1267 DVU_3257 DVU_3257 pppA pppA DVU_1269 DVU_1269 DVU_2069 DVU_2069 flgC flgC DVU_2768 DVU_2768
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
DVU_1268Hypothetical protein; Identified by Glimmer2; putative. (137 aa)    
Predicted Functional Partners:
DVU_1272
General secretion pathway protein E, putative; Identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM PF05157.
  
 
 0.822
DVU_1271
General secretion pathway protein F, putative; Identified by similarity to GP:4139238; match to protein family HMM PF00482.
  
  
 0.814
DVU_1266
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.798
DVU_1267
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.796
DVU_3257
DNA internalization-related competence protein ComEC/Rec2; Identified by similarity to SP:P39695; match to protein family HMM TIGR00360.
  
  
 0.717
pppA
Type IV prepilin-like proteins leader peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.562
DVU_1269
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.560
DVU_2069
DNA processing protein DprA, putative; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.
  
  
 0.552
flgC
Flagellar basal-body rod protein FlgC; Identified by similarity to SP:P75935; match to protein family HMM PF00460; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.
   
   0.489
DVU_2768
comF family protein; Identified by similarity to SP:P31773.
  
  
 0.487
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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