Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0624 | DVU_1290 | DVU_0624 | DVU_1290 | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | Nitrate reductase, gamma subunit, putative; Identified by match to protein family HMM PF02665. | 0.912 |
| DVU_0624 | DVU_1435 | DVU_0624 | DVU_1435 | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | Membrane protein, putative; Identified by similarity to OMNI:NTL03PA01784. | 0.900 |
| DVU_0624 | nrfA | DVU_0624 | DVU_0625 | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | Cytochrome c nitrite reductase, catalytic subunit NfrA, putative; Catalytic subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Has both nitrite and sulfite reductase activities. Catalyzes the reduction of nitrite to ammonia, consuming six electrons acquired by the electron donor subunit NrfH from the menaquinone pool, in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced [...] | 0.999 |
| DVU_1286 | DVU_1287 | DVU_1286 | DVU_1287 | Reductase, transmembrane subunit, putative; Identified by match to protein family HMM PF03916. | Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. | 0.995 |
| DVU_1286 | DVU_1288 | DVU_1286 | DVU_1288 | Reductase, transmembrane subunit, putative; Identified by match to protein family HMM PF03916. | Cytochrome c family protein; Identified by similarity to OMNI:AF0503. | 0.986 |
| DVU_1286 | DVU_1289 | DVU_1286 | DVU_1289 | Reductase, transmembrane subunit, putative; Identified by match to protein family HMM PF03916. | Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. | 0.963 |
| DVU_1286 | DVU_1290 | DVU_1286 | DVU_1290 | Reductase, transmembrane subunit, putative; Identified by match to protein family HMM PF03916. | Nitrate reductase, gamma subunit, putative; Identified by match to protein family HMM PF02665. | 0.964 |
| DVU_1286 | DVU_1291 | DVU_1286 | DVU_1291 | Reductase, transmembrane subunit, putative; Identified by match to protein family HMM PF03916. | Hypothetical protein; Identified by Glimmer2; putative. | 0.922 |
| DVU_1286 | dsvA | DVU_1286 | DVU_0402 | Reductase, transmembrane subunit, putative; Identified by match to protein family HMM PF03916. | Dissimilatory sulfite reductase alpha subunit; Part of the complex that catalyzes the reduction of sulfite to sulfide. The alpha and beta subunits may have arisen by gene duplication. They both bind 2 iron-sulfur clusters, but the alpha subunit seems to be catalytically inactive, due to substitutions along the putative substrate access channel, and because it binds sirohydrochlorin (the dematallated form of siroheme) instead of siroheme. | 0.820 |
| DVU_1286 | dsvC | DVU_1286 | DVU_2776 | Reductase, transmembrane subunit, putative; Identified by match to protein family HMM PF03916. | Dissimilatory sulfite reductase, gamma subunit; Catalyzes the reduction of sulfite to sulfide. This is the terminal oxidation reaction in sulfate respiration, a process catalyzed by the sulfate-reducing bacteria; Belongs to the DsrC/TusE family. | 0.685 |
| DVU_1287 | DVU_1286 | DVU_1287 | DVU_1286 | Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. | Reductase, transmembrane subunit, putative; Identified by match to protein family HMM PF03916. | 0.995 |
| DVU_1287 | DVU_1288 | DVU_1287 | DVU_1288 | Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. | Cytochrome c family protein; Identified by similarity to OMNI:AF0503. | 0.986 |
| DVU_1287 | DVU_1289 | DVU_1287 | DVU_1289 | Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. | Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. | 0.988 |
| DVU_1287 | DVU_1290 | DVU_1287 | DVU_1290 | Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. | Nitrate reductase, gamma subunit, putative; Identified by match to protein family HMM PF02665. | 0.946 |
| DVU_1287 | DVU_1291 | DVU_1287 | DVU_1291 | Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. | Hypothetical protein; Identified by Glimmer2; putative. | 0.782 |
| DVU_1287 | dsvA | DVU_1287 | DVU_0402 | Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. | Dissimilatory sulfite reductase alpha subunit; Part of the complex that catalyzes the reduction of sulfite to sulfide. The alpha and beta subunits may have arisen by gene duplication. They both bind 2 iron-sulfur clusters, but the alpha subunit seems to be catalytically inactive, due to substitutions along the putative substrate access channel, and because it binds sirohydrochlorin (the dematallated form of siroheme) instead of siroheme. | 0.650 |
| DVU_1287 | dsvC | DVU_1287 | DVU_2776 | Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. | Dissimilatory sulfite reductase, gamma subunit; Catalyzes the reduction of sulfite to sulfide. This is the terminal oxidation reaction in sulfate respiration, a process catalyzed by the sulfate-reducing bacteria; Belongs to the DsrC/TusE family. | 0.590 |
| DVU_1288 | DVU_1286 | DVU_1288 | DVU_1286 | Cytochrome c family protein; Identified by similarity to OMNI:AF0503. | Reductase, transmembrane subunit, putative; Identified by match to protein family HMM PF03916. | 0.986 |
| DVU_1288 | DVU_1287 | DVU_1288 | DVU_1287 | Cytochrome c family protein; Identified by similarity to OMNI:AF0503. | Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. | 0.986 |
| DVU_1288 | DVU_1289 | DVU_1288 | DVU_1289 | Cytochrome c family protein; Identified by similarity to OMNI:AF0503. | Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. | 0.992 |
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