STRINGSTRING
DVU_1356 DVU_1356 DVU_1355 DVU_1355 DVU_1357 DVU_1357 DVU_1354 DVU_1354 DVU_0449 DVU_0449 poR poR DVU_0810 DVU_0810 DVU_0772 DVU_0772 DVU_3112 DVU_3112 dnaE dnaE DVU_2896 DVU_2896
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1356HD domain protein; Identified by match to protein family HMM PF01966. (267 aa)    
Predicted Functional Partners:
DVU_1355
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.775
DVU_1357
Conserved domain protein; Identified by similarity to OMNI:NTL01TT0547.
       0.773
DVU_1354
Hypothetical protein; Identified by Glimmer2; putative.
       0.697
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.588
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
   0.502
DVU_0810
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.477
DVU_0772
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.468
DVU_3112
TPR domain protein; Identified by match to protein family HMM PF00515.
  
   0.465
dnaE
DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR00594.
       0.463
DVU_2896
TPR domain protein; Identified by match to protein family HMM PF00515.
  
   0.463
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.