STRINGSTRING
DVU_1382 DVU_1382 DVU_0665 DVU_0665 DVU_0664 DVU_0664 DVU_1022 DVU_1022 DVU_0298 DVU_0298 DVU_3273 DVU_3273 DVU_1021 DVU_1021 DVU_2553 DVU_2553 DVU_1381 DVU_1381 DVU_1380 DVU_1380 DVU_2077 DVU_2077
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1382HesB family selenoprotein; Selenoprotein; identified by match to protein family HMM PF01521; Belongs to the HesB/IscA family. (107 aa)    
Predicted Functional Partners:
DVU_0665
Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.
 
 
 0.984
DVU_0664
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
 
  
 0.765
DVU_1022
SUF system FeS assembly ATPase SufC, putative; Identified by similarity to OMNI:NTL02MA4294; match to protein family HMM PF00005; match to protein family HMM TIGR01978.
  
 
 0.699
DVU_0298
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 
 0.696
DVU_3273
Conserved hypothetical protein; Identified by similarity to GP:944973.
  
    0.693
DVU_1021
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA4295; match to protein family HMM PF01458.
  
 
 0.669
DVU_2553
Identified by match to protein family HMM PF01106.
  
 
 0.649
DVU_1381
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.613
DVU_1380
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.603
DVU_2077
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130.
    
 
 0.590
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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