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DVU_1404 DVU_1404 DVU_2897 DVU_2897 DVU_0739 DVU_0739 cobO cobO DVU_1405 DVU_1405 DVU_2272 DVU_2272 DVU_2824 DVU_2824 DVU_0665 DVU_0665 purM purM poR poR DVU_0946 DVU_0946
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_1404Radical SAM domain protein; Identified by match to protein family HMM PF04055. (368 aa)    
Predicted Functional Partners:
DVU_2897
Conserved hypothetical protein; Identified by similarity to SP:O67039; match to protein family HMM PF01875; Belongs to the MEMO1 family.
    0.968
DVU_0739
Conserved hypothetical protein TIGR00296; Identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296.
    0.965
cobO
cob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
  
    0.796
DVU_1405
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
DVU_2272
Formate acetyltransferase, putative; Identified by similarity to SP:P32674; match to protein family HMM PF01228; match to protein family HMM PF02901.
  
  
 0.651
DVU_2824
Formate acetyltransferase; Identified by match to protein family HMM PF01228; match to protein family HMM PF02901.
  
  
 0.651
DVU_0665
Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.
 
  
 0.628
purM
Phosphoribosylformylglycinamidine cyclo-ligase; Identified by similarity to SP:P08178; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878.
       0.604
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
     
 0.519
DVU_0946
Sigma-54 dependent transcriptional regulator/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.
    
   0.438
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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