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DVU_1418 DVU_1418 DVU_1419 DVU_1419 DVU_0581 DVU_0581 DVU_3215 DVU_3215 glnB-1 glnB-1 DVU_0140 DVU_0140 DVU_0145 DVU_0145 DVU_2966 DVU_2966 DVU_3238 DVU_3238 DVU_2963 DVU_2963 DVU_0888 DVU_0888
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
DVU_1418Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (579 aa)    
Predicted Functional Partners:
DVU_1419
Sigma-54 dependent transcriptional regulator/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
 
 0.958
DVU_0581
Response regulator/anti-anti-sigma factor; Identified by match to protein family HMM PF00072.
 
 
 0.822
DVU_3215
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.812
glnB-1
Nitrogen regulatory protein P-II; Identified by similarity to SP:P21193; match to protein family HMM PF00543; Belongs to the P(II) protein family.
  
 
 0.799
DVU_0140
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.792
DVU_0145
Response regulator; Identified by match to protein family HMM PF00072.
  
 
 0.788
DVU_2966
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.787
DVU_3238
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.786
DVU_2963
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.772
DVU_0888
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 0.744
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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