STRINGSTRING
DVU_1460 DVU_1460 hemA hemA DVU_2210 DVU_2210 DVU_1462 DVU_1462 DVU_0742 DVU_0742 DVU_0298 DVU_0298 DVU_0651 DVU_0651 DVU_0691 DVU_0691 tilS tilS DVU_0400 DVU_0400 DVU_0772 DVU_0772
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_1460Hypothetical protein; Identified by Glimmer2; putative. (111 aa)    
Predicted Functional Partners:
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
  
    0.773
DVU_2210
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF02624; match to protein family HMM TIGR00702.
  
     0.768
DVU_1462
Cytochrome c assembly protein, putative; Identified by match to protein family HMM PF01578.
  
    0.767
DVU_0742
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.765
DVU_0298
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.746
DVU_0651
Membrane protein, putative.
  
     0.716
DVU_0691
Membrane protein, putative.
  
     0.713
tilS
Conserved domain protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
  
    0.704
DVU_0400
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.701
DVU_0772
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.656
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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