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ppiC ppiC DVU_0665 DVU_0665 DVU_2247 DVU_2247 RpsA RpsA DVU_1067 DVU_1067 DVU_1471 DVU_1471 DVU_2738 DVU_2738 DVU_0060 DVU_0060 poR poR DVU_0967 DVU_0967 DVU_0668 DVU_0668
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppiCPeptidyl-prolyl cis-trans isomerase C; Identified by similarity to SP:P39159; match to protein family HMM PF00639. (94 aa)    
Predicted Functional Partners:
DVU_0665
Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.
  
  
 0.667
DVU_2247
Antioxidant, AhpC/Tsa family; Identified by match to protein family HMM PF00578.
   
 
 0.617
RpsA
Ribosomal protein S1, putative; Identified by similarity to SP:P02349; match to protein family HMM PF00575.
  
    0.582
DVU_1067
Membrane protein, Bmp family; Identified by match to protein family HMM PF02608.
   
  
 0.569
DVU_1471
Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.
 
    0.566
DVU_2738
Methyl-accepting chemotaxis protein; Identified by similarity to SP:P39214; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229.
  
  
 0.562
DVU_0060
Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  
 0.546
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
 
 0.546
DVU_0967
Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; Belongs to the binding-protein-dependent transport system permease family.
   
  
 0.541
DVU_0668
Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM TIGR00229.
      
 0.539
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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