STRINGSTRING
DVU_1486 DVU_1486 DVU_1490 DVU_1490 DVU_2157 DVU_2157 DVU_1483 DVU_1483 DVU_1484 DVU_1484 DVU_1485 DVU_1485 DVU_1481 DVU_1481 DVU_1482 DVU_1482 DVU_1488 DVU_1488 DVU_2154 DVU_2154 DVU_2396 DVU_2396
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1486Tail fiber protein, truncation. (770 aa)    
Predicted Functional Partners:
DVU_1490
Tail tape measure protein, putative.
 
    0.888
DVU_2157
Tail tape meausure protein, putative.
 
    0.878
DVU_1483
Tail fiber assembly protein, putative.
  
    0.802
DVU_1484
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.783
DVU_1485
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.783
DVU_1481
Nuclease domain protein; Identified by match to protein family HMM PF00565.
       0.689
DVU_1482
Hypothetical protein; Identified by Glimmer2; putative.
       0.689
DVU_1488
Minor tail protein, putative.
  
  
 0.689
DVU_2154
Tail assembly protein, putative; Identified by match to protein family HMM PF00877.
 
    0.678
DVU_2396
Alcohol dehydrogenase, iron-containing; Identified by similarity to SP:P31005; match to protein family HMM PF00465.
   
  
 0.583
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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