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DVU_1488 DVU_1488 DVU_1490 DVU_1490 DVU_1487 DVU_1487 DVU_1489 DVU_1489 DVU_2157 DVU_2157 DVU_0093 DVU_0093 DVU_2153 DVU_2153 DVU_2155 DVU_2155 DVU_1486 DVU_1486 DVU_1491 DVU_1491 DVU_2856 DVU_2856
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1488Minor tail protein, putative. (301 aa)    
Predicted Functional Partners:
DVU_1490
Tail tape measure protein, putative.
  
  
 0.970
DVU_1487
Conserved domain protein.
  
  
 0.845
DVU_1489
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.794
DVU_2157
Tail tape meausure protein, putative.
  
    0.787
DVU_0093
Conserved domain protein/glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534; match to protein family HMM PF02231.
   
    0.759
DVU_2153
Tail fiber protein, putative.
  
  
 0.695
DVU_2155
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.690
DVU_1486
Tail fiber protein, truncation.
  
  
 0.689
DVU_1491
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01PF1323.
       0.511
DVU_2856
Conserved domain protein; Identified by similarity to GP:915377.
  
  
 0.487
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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