STRINGSTRING
DVU_1493 DVU_1493 DVU_1495 DVU_1495 DVU_1496 DVU_1496 DVU_2153 DVU_2153 DVU_1487 DVU_1487 DVU_1494 DVU_1494 DVU_1156 DVU_1156 DVU_1497 DVU_1497 DVU_1511 DVU_1511 DVU_1492 DVU_1492 DVU_1498 DVU_1498
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1493Hypothetical protein; Identified by Glimmer2; putative. (127 aa)    
Predicted Functional Partners:
DVU_1495
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.954
DVU_1496
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.936
DVU_2153
Tail fiber protein, putative.
   
    0.846
DVU_1487
Conserved domain protein.
   
    0.809
DVU_1494
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.793
DVU_1156
Sigma-54 dependent transcriptional regulator, putative/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.
   
    0.730
DVU_1497
Head-tail adaptor, putative; Identified by match to protein family HMM TIGR01563.
  
    0.672
DVU_1511
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.661
DVU_1492
Hypothetical protein; Identified by Glimmer2; putative.
       0.658
DVU_1498
Conserved hypothetical protein; Identified by similarity to GP:17484030.
  
    0.644
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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