STRINGSTRING
DVU_1499 DVU_1499 DVU_1498 DVU_1498 DVU_1497 DVU_1497 DVU_1496 DVU_1496 DVU_1494 DVU_1494 DVU_1500 DVU_1500 DVU_1495 DVU_1495 DVU_1493 DVU_1493 DVU_1492 DVU_1492 DVU_1502 DVU_1502 DVU_1501 DVU_1501
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1499Hypothetical protein; Identified by Glimmer2; putative. (89 aa)    
Predicted Functional Partners:
DVU_1498
Conserved hypothetical protein; Identified by similarity to GP:17484030.
  
    0.826
DVU_1497
Head-tail adaptor, putative; Identified by match to protein family HMM TIGR01563.
  
    0.816
DVU_1496
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.787
DVU_1494
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.712
DVU_1500
Major capsid protein, HK97 family; Identified by match to protein family HMM TIGR01554.
  
    0.692
DVU_1495
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.657
DVU_1493
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.642
DVU_1492
Hypothetical protein; Identified by Glimmer2; putative.
       0.536
DVU_1502
Portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.
  
    0.449
DVU_1501
Identified by match to protein family HMM PF00574.
  
    0.432
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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