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DVU_1506 DVU_1506 DVU_1508 DVU_1508 DVU_1507 DVU_1507 DVU_1505 DVU_1505 DVU_1502 DVU_1502 DVU_1501 DVU_1501 DVU_1503 DVU_1503 DVU_1504 DVU_1504 DVU_1509 DVU_1509 DVU_1510 DVU_1510
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1506Hypothetical protein; Identified by Glimmer2; putative. (82 aa)    
Predicted Functional Partners:
DVU_1508
Conserved hypothetical protein; Identified by similarity to GP:27550078.
  
    0.786
DVU_1507
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.785
DVU_1505
Holin, putative; Identified by match to protein family HMM PF01844.
  
    0.734
DVU_1502
Portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.
  
    0.547
DVU_1501
Identified by match to protein family HMM PF00574.
  
    0.539
DVU_1503
Terminase, large subunit; Identified by match to protein family HMM PF03354.
  
    0.537
DVU_1504
Terminase, small subunit; Identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558.
  
    0.537
DVU_1509
Conserved hypothetical protein; Identified by similarity to GP:21913207.
       0.467
DVU_1510
Hypothetical protein; Identified by Glimmer2; putative.
       0.467
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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