STRINGSTRING
DVU_1514 DVU_1514 DVU_1515 DVU_1515 DVU_1513 DVU_1513 DVU_1516 DVU_1516 DVU_1511 DVU_1511 DVU_1512 DVU_1512 DVU_1517 DVU_1517 DVU_1505 DVU_1505 DVU_1502 DVU_1502
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1514Hypothetical protein; Identified by Glimmer2; putative. (405 aa)    
Predicted Functional Partners:
DVU_1515
Type II DNA modification methyltransferase, putative; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675.
  
    0.817
DVU_1513
Conserved hypothetical protein; Identified by similarity to GP:21202981.
  
    0.535
DVU_1516
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.489
DVU_1511
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.486
DVU_1512
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.476
DVU_1517
Transcriptional regulator cII, putative.
  
    0.467
DVU_1505
Holin, putative; Identified by match to protein family HMM PF01844.
  
    0.415
DVU_1502
Portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.
  
    0.404
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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