STRINGSTRING
DVU_1524 DVU_1524 DVU_1522 DVU_1522 DVU_1523 DVU_1523 DVU_1132 DVU_1132 DVU_1525 DVU_1525 DVU_1106 DVU_1106 DVU_1252 DVU_1252 DVU_2153 DVU_2153 DVU_2181 DVU_2181 DVU_0351 DVU_0351 DVU_2032 DVU_2032
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1524Conserved hypothetical protein; Identified by similarity to GP:13491641. (298 aa)    
Predicted Functional Partners:
DVU_1522
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.842
DVU_1523
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.809
DVU_1132
Conserved hypothetical protein; Identified by similarity to OMNI:NMB0985.
   
    0.767
DVU_1525
Conserved domain protein; Identified by similarity to OMNI:NTL02MA1432.
  
    0.739
DVU_1106
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.697
DVU_1252
Membrane protein, putative.
  
    0.656
DVU_2153
Tail fiber protein, putative.
  
    0.573
DVU_2181
Antirepressor, putative.
 
     0.542
DVU_0351
Cytidine 5'monophosphate N-acetylneuraminic acid synthetase/polysaccharide biosynthesis protein; Identified by similarity to SP:P39627; similar to GP:4741793.
  
     0.519
DVU_2032
ERF family protein; Identified by match to protein family HMM PF04404.
 
     0.493
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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