node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_1525 | rplC | DVU_1525 | DVU_1303 | Conserved domain protein; Identified by similarity to OMNI:NTL02MA1432. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.893 |
DVU_1525 | rplN | DVU_1525 | DVU_1313 | Conserved domain protein; Identified by similarity to OMNI:NTL02MA1432. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.878 |
DVU_1525 | rplV | DVU_1525 | DVU_1308 | Conserved domain protein; Identified by similarity to OMNI:NTL02MA1432. | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.902 |
DVU_1525 | rpmC | DVU_1525 | DVU_1311 | Conserved domain protein; Identified by similarity to OMNI:NTL02MA1432. | Ribosomal protein L29; Identified by similarity to SP:P04457; match to protein family HMM PF00831; match to protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family. | 0.920 |
DVU_1525 | rpsC | DVU_1525 | DVU_1309 | Conserved domain protein; Identified by similarity to OMNI:NTL02MA1432. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.959 |
DVU_1525 | rpsG | DVU_1525 | DVU_1299 | Conserved domain protein; Identified by similarity to OMNI:NTL02MA1432. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.896 |
DVU_1525 | rpsL | DVU_1525 | DVU_1298 | Conserved domain protein; Identified by similarity to OMNI:NTL02MA1432. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.891 |
DVU_1525 | rpsN | DVU_1525 | DVU_1316 | Conserved domain protein; Identified by similarity to OMNI:NTL02MA1432. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.895 |
DVU_1525 | rpsO | DVU_1525 | DVU_0504 | Conserved domain protein; Identified by similarity to OMNI:NTL02MA1432. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.938 |
DVU_1525 | rpsQ | DVU_1525 | DVU_1312 | Conserved domain protein; Identified by similarity to OMNI:NTL02MA1432. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.939 |
rplC | DVU_1525 | DVU_1303 | DVU_1525 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Conserved domain protein; Identified by similarity to OMNI:NTL02MA1432. | 0.893 |
rplC | rplN | DVU_1303 | DVU_1313 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
rplC | rplV | DVU_1303 | DVU_1308 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.999 |
rplC | rpmC | DVU_1303 | DVU_1311 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L29; Identified by similarity to SP:P04457; match to protein family HMM PF00831; match to protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
rplC | rpsC | DVU_1303 | DVU_1309 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplC | rpsG | DVU_1303 | DVU_1299 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.998 |
rplC | rpsL | DVU_1303 | DVU_1298 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.995 |
rplC | rpsN | DVU_1303 | DVU_1316 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.997 |
rplC | rpsO | DVU_1303 | DVU_0504 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.994 |
rplC | rpsQ | DVU_1303 | DVU_1312 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.998 |