STRINGSTRING
DVU_1545 DVU_1545 DVU_1017 DVU_1017 DVU_1667 DVU_1667 DVU_0725 DVU_0725 DVU_1018 DVU_1018 acpP acpP DVU_2562 DVU_2562 DVU_2127 DVU_2127 DVU_3254 DVU_3254 DVU_0100 DVU_0100 DVU_2336 DVU_2336
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1545Hemolysin-type calcium-binding repeat/calx-beta domain protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF03160; match to protein family HMM TIGR01612. (2414 aa)    
Predicted Functional Partners:
DVU_1017
ABC transporter, ATP-binding protein/permease protein; Identified by similarity to OMNI:VCA1084; match to protein family HMM PF00005; match to protein family HMM PF00664.
 
  
 0.859
DVU_1667
Identified by match to protein family HMM PF01580.
   
 
 0.804
DVU_0725
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MM0619; match to protein family HMM PF03190.
   
 
 0.774
DVU_1018
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
 
  
 0.755
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.730
DVU_2562
Acyl carrier protein, putative; Identified by similarity to SP:P20804.
   
 
 0.730
DVU_2127
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
  
 0.687
DVU_3254
PDZ domain protein; Identified by match to protein family HMM PF00595.
  
 
 0.661
DVU_0100
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
   
 
 0.659
DVU_2336
Carboxyl-terminal protease; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225.
  
 
 0.659
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (16%) [HD]