STRINGSTRING
DVU_1557 DVU_1557 DVU_1558 DVU_1558 DVU_1556 DVU_1556 DVU_1555 DVU_1555 DVU_1554 DVU_1554 DVU_1553 DVU_1553 DVU_1552 DVU_1552 mop mop DVU_1551 DVU_1551 DVU_1560 DVU_1560 DVU_0333 DVU_0333
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1557Hypothetical protein; Identified by Glimmer2; putative. (71 aa)    
Predicted Functional Partners:
DVU_1558
Cysteine-rich domain/iron-sulfur cluster-binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.
 
    0.959
DVU_1556
Conserved domain protein.
 
    0.957
DVU_1555
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.956
DVU_1554
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
    0.955
DVU_1553
AMP-binding protein.
 
    0.952
DVU_1552
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02SC5917; match to protein family HMM PF02625.
 
    0.931
mop
Aldehyde oxidoreductase; Identified by similarity to SP:Q46509; match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.
 
    0.924
DVU_1551
HD domain protein; Identified by match to protein family HMM PF01966.
 
    0.884
DVU_1560
Molybdopterin biosynthesis protein, putative; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
    0.599
DVU_0333
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.575
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.