node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_1604 | DVU_1606 | DVU_1604 | DVU_1606 | Hypothetical protein; Identified by Glimmer2; putative. | Potassium uptake protein, TrkA family; Identified by similarity to OMNI:NTL01SS00580; match to protein family HMM PF02080; match to protein family HMM PF02254. | 0.598 |
DVU_1604 | DVU_1607 | DVU_1604 | DVU_1607 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.575 |
DVU_1604 | ligA | DVU_1604 | DVU_1608 | Hypothetical protein; Identified by Glimmer2; putative. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.502 |
DVU_1604 | uvrB | DVU_1604 | DVU_1605 | Hypothetical protein; Identified by Glimmer2; putative. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.622 |
DVU_1606 | DVU_1604 | DVU_1606 | DVU_1604 | Potassium uptake protein, TrkA family; Identified by similarity to OMNI:NTL01SS00580; match to protein family HMM PF02080; match to protein family HMM PF02254. | Hypothetical protein; Identified by Glimmer2; putative. | 0.598 |
DVU_1606 | DVU_1607 | DVU_1606 | DVU_1607 | Potassium uptake protein, TrkA family; Identified by similarity to OMNI:NTL01SS00580; match to protein family HMM PF02080; match to protein family HMM PF02254. | Hypothetical protein; Identified by Glimmer2; putative. | 0.776 |
DVU_1606 | ligA | DVU_1606 | DVU_1608 | Potassium uptake protein, TrkA family; Identified by similarity to OMNI:NTL01SS00580; match to protein family HMM PF02080; match to protein family HMM PF02254. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.663 |
DVU_1606 | uvrB | DVU_1606 | DVU_1605 | Potassium uptake protein, TrkA family; Identified by similarity to OMNI:NTL01SS00580; match to protein family HMM PF02080; match to protein family HMM PF02254. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.810 |
DVU_1607 | DVU_1604 | DVU_1607 | DVU_1604 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.575 |
DVU_1607 | DVU_1606 | DVU_1607 | DVU_1606 | Hypothetical protein; Identified by Glimmer2; putative. | Potassium uptake protein, TrkA family; Identified by similarity to OMNI:NTL01SS00580; match to protein family HMM PF02080; match to protein family HMM PF02254. | 0.776 |
DVU_1607 | ligA | DVU_1607 | DVU_1608 | Hypothetical protein; Identified by Glimmer2; putative. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.624 |
DVU_1607 | uvrB | DVU_1607 | DVU_1605 | Hypothetical protein; Identified by Glimmer2; putative. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.780 |
ligA | DVU_1604 | DVU_1608 | DVU_1604 | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | Hypothetical protein; Identified by Glimmer2; putative. | 0.502 |
ligA | DVU_1606 | DVU_1608 | DVU_1606 | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | Potassium uptake protein, TrkA family; Identified by similarity to OMNI:NTL01SS00580; match to protein family HMM PF02080; match to protein family HMM PF02254. | 0.663 |
ligA | DVU_1607 | DVU_1608 | DVU_1607 | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | Hypothetical protein; Identified by Glimmer2; putative. | 0.624 |
ligA | uvrB | DVU_1608 | DVU_1605 | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.781 |
uvrB | DVU_1604 | DVU_1605 | DVU_1604 | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | Hypothetical protein; Identified by Glimmer2; putative. | 0.622 |
uvrB | DVU_1606 | DVU_1605 | DVU_1606 | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | Potassium uptake protein, TrkA family; Identified by similarity to OMNI:NTL01SS00580; match to protein family HMM PF02080; match to protein family HMM PF02254. | 0.810 |
uvrB | DVU_1607 | DVU_1605 | DVU_1607 | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | Hypothetical protein; Identified by Glimmer2; putative. | 0.780 |
uvrB | ligA | DVU_1605 | DVU_1608 | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.781 |