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DVU_1627 DVU_1627 DVU_1662 DVU_1662 DVU_1663 DVU_1663 DVU_1626 DVU_1626 DVU_0127 DVU_0127 DVU_1342 DVU_1342 DVU_0549 DVU_0549 DVU_0714 DVU_0714 DVU_1056 DVU_1056 DVU_2437 DVU_2437 modB modB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1627ABC transporter, ATP-binding protein; Identified by similarity to OMNI:DR2134; match to protein family HMM PF00005. (241 aa)    
Predicted Functional Partners:
DVU_1662
Permease, putative; Identified by match to protein family HMM PF03739.
 
 0.994
DVU_1663
Permease, putative; Identified by match to protein family HMM PF03739.
 
 0.993
DVU_1626
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.976
DVU_0127
Membrane protein, putative; Identified by similarity to SP:P75774.
 
 
 0.937
DVU_1342
Cation ABC transporter, ATP-binding protein, putative; Identified by similarity to SP:Q9XDA6; match to protein family HMM PF00005.
 
   
0.905
DVU_0549
High-affinity branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P21628; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
    0.901
DVU_0714
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
    0.901
DVU_1056
Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
 
   
0.847
DVU_2437
ABC transporter, permease protein; Identified by similarity to OMNI:NTL01TE1382; match to protein family HMM PF02687.
 
     0.836
modB
Molybdenum ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
      0.825
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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