Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_1648 | DVU_1650 | DVU_1648 | DVU_1650 | Lipoprotein, putative. | Conserved hypothetical protein; Identified by similarity to SP:P45576. | 0.535 |
DVU_1648 | DVU_1651 | DVU_1648 | DVU_1651 | Lipoprotein, putative. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00387. | 0.529 |
DVU_1648 | DVU_1652 | DVU_1648 | DVU_1652 | Lipoprotein, putative. | HIT family protein; Identified by match to protein family HMM PF01230. | 0.523 |
DVU_1648 | DVU_3355 | DVU_1648 | DVU_3355 | Lipoprotein, putative. | Identified by similarity to OMNI:CT0796; match to protein family HMM PF01145. | 0.557 |
DVU_1648 | atpC | DVU_1648 | DVU_0774 | Lipoprotein, putative. | ATP synthase, F1 epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.619 |
DVU_1648 | lysA-1 | DVU_1648 | DVU_1647 | Lipoprotein, putative. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.604 |
DVU_1648 | mutS | DVU_1648 | DVU_1649 | Lipoprotein, putative. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.805 |
DVU_1648 | secD | DVU_1648 | DVU_1819 | Lipoprotein, putative. | Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.608 |
DVU_1648 | xerC | DVU_1648 | DVU_1654 | Lipoprotein, putative. | Site-specific recombinase, phage integrase family; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.408 |
DVU_1648 | yajC | DVU_1648 | DVU_1820 | Lipoprotein, putative. | Preprotein translocase, YajC subunit; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions. | 0.602 |
DVU_1650 | DVU_1648 | DVU_1650 | DVU_1648 | Conserved hypothetical protein; Identified by similarity to SP:P45576. | Lipoprotein, putative. | 0.535 |
DVU_1650 | DVU_1651 | DVU_1650 | DVU_1651 | Conserved hypothetical protein; Identified by similarity to SP:P45576. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00387. | 0.808 |
DVU_1650 | DVU_1652 | DVU_1650 | DVU_1652 | Conserved hypothetical protein; Identified by similarity to SP:P45576. | HIT family protein; Identified by match to protein family HMM PF01230. | 0.773 |
DVU_1650 | lysA-1 | DVU_1650 | DVU_1647 | Conserved hypothetical protein; Identified by similarity to SP:P45576. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.412 |
DVU_1650 | mutS | DVU_1650 | DVU_1649 | Conserved hypothetical protein; Identified by similarity to SP:P45576. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.532 |
DVU_1650 | xerC | DVU_1650 | DVU_1654 | Conserved hypothetical protein; Identified by similarity to SP:P45576. | Site-specific recombinase, phage integrase family; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.605 |
DVU_1651 | DVU_1648 | DVU_1651 | DVU_1648 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00387. | Lipoprotein, putative. | 0.529 |
DVU_1651 | DVU_1650 | DVU_1651 | DVU_1650 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00387. | Conserved hypothetical protein; Identified by similarity to SP:P45576. | 0.808 |
DVU_1651 | DVU_1652 | DVU_1651 | DVU_1652 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00387. | HIT family protein; Identified by match to protein family HMM PF01230. | 0.924 |
DVU_1651 | mutS | DVU_1651 | DVU_1649 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00387. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.525 |
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