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DVU_1682 DVU_1682 mreB-2 mreB-2 DVU_3190 DVU_3190 suhB suhB DVU_0449 DVU_0449 DVU_0810 DVU_0810 DVU_0933 DVU_0933 DVU_0981 DVU_0981 DVU_0843 DVU_0843 ccmB ccmB DVU_2459 DVU_2459
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_1682GAF domain protein; Identified by match to protein family HMM PF01590. (344 aa)    
Predicted Functional Partners:
mreB-2
Rod shape-determining protein MreB; Identified by similarity to SP:P13519; match to protein family HMM TIGR00904.
  
    0.807
DVU_3190
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.783
suhB
Inositol-1-monophosphatase; Identified by similarity to SP:P22783; match to protein family HMM PF00459; Belongs to the inositol monophosphatase superfamily.
  
  
 0.771
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.770
DVU_0810
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.761
DVU_0933
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM TIGR00229.
  
 
 0.744
DVU_0981
Multiphosphoryl transfer protein, putative; Identified by similarity to SP:P23388; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF03610; match to protein family HMM PF05524; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417; Belongs to the PEP-utilizing enzyme family.
   
 
 0.733
DVU_0843
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.717
ccmB
Cytochrome c-type biogenesis protein CcmB.
  
    0.707
DVU_2459
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.701
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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