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DVU_1686 DVU_1686 DVU_1688 DVU_1688 DVU_1685 DVU_1685 DVU_1687 DVU_1687 DVU_1667 DVU_1667 DVU_1941 DVU_1941 nadE nadE polA polA gcvT gcvT dnaN dnaN DVU_1683 DVU_1683
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_1686ATPase, AAA family; Identified by match to protein family HMM PF00004. (411 aa)    
Predicted Functional Partners:
DVU_1688
1-acyl-sn-glycerol-3-phosphate acyltransferase, putative; Identified by match to protein family HMM PF01553.
  
  
 0.819
DVU_1685
Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
  
    0.803
DVU_1687
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
    0.779
DVU_1667
Identified by match to protein family HMM PF01580.
  
 0.717
DVU_1941
HAD-superfamily hydrolase, subfamily IIA; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460.
 
 
    0.679
nadE
Glutamine-dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.669
polA
DNA polymerase I; Identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
 
  
 0.658
gcvT
Glycine cleavage system T protein; Identified by match to protein family HMM PF01571; match to protein family HMM TIGR00528.
       0.652
dnaN
DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663.
    
 
 0.587
DVU_1683
Hypothetical protein; Identified by Glimmer2; putative.
       0.563
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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