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DVU_1760 DVU_1760 DVU_2378 DVU_2378 DVU_2086 DVU_2086 DVU_0721 DVU_0721 DVU_0743 DVU_0743 DVU_1761 DVU_1761 DVU_2114 DVU_2114 DVU_3142 DVU_3142 pth pth DVU_1762 DVU_1762 DVU_0330 DVU_0330
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_1760Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (194 aa)    
Predicted Functional Partners:
DVU_2378
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
  
 0.655
DVU_2086
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
  
 0.638
DVU_0721
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
    
 
 0.621
DVU_0743
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
   
 
 0.619
DVU_1761
Hypothetical protein; Identified by Glimmer2; putative.
       0.568
DVU_2114
Sigma-54 dependent transcriptional regulator/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
      
 0.555
DVU_3142
Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF00785; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199.
   
  
 0.555
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.479
DVU_1762
Membrane protein, putative; Identified by similarity to OMNI:VCA1051; match to protein family HMM PF03733.
       0.479
DVU_0330
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01966.
   
  
 0.453
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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