Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_1787 | DVU_1791 | DVU_1787 | DVU_1791 | Nuclease domain protein; Identified by match to protein family HMM PF00565. | Identified by match to protein family HMM PF02637. | 0.499 |
| DVU_1787 | dnaG | DVU_1787 | DVU_1789 | Nuclease domain protein; Identified by match to protein family HMM PF00565. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.504 |
| DVU_1787 | mutS2 | DVU_1787 | DVU_1790 | Nuclease domain protein; Identified by match to protein family HMM PF00565. | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.424 |
| DVU_1787 | rpoD | DVU_1787 | DVU_1788 | Nuclease domain protein; Identified by match to protein family HMM PF00565. | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth; Belongs to the sigma-70 factor family. RpoD/SigA subfamily. | 0.523 |
| DVU_1791 | DVU_1787 | DVU_1791 | DVU_1787 | Identified by match to protein family HMM PF02637. | Nuclease domain protein; Identified by match to protein family HMM PF00565. | 0.499 |
| DVU_1791 | dnaG | DVU_1791 | DVU_1789 | Identified by match to protein family HMM PF02637. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.723 |
| DVU_1791 | mutS2 | DVU_1791 | DVU_1790 | Identified by match to protein family HMM PF02637. | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.814 |
| DVU_1791 | rplS | DVU_1791 | DVU_0835 | Identified by match to protein family HMM PF02637. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.484 |
| DVU_1791 | rplU | DVU_1791 | DVU_0927 | Identified by match to protein family HMM PF02637. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.485 |
| DVU_1791 | rpmE | DVU_1791 | DVU_2912 | Identified by match to protein family HMM PF02637. | Ribosomal protein L31; Binds the 23S rRNA. | 0.600 |
| DVU_1791 | rpmF | DVU_1791 | DVU_1209 | Identified by match to protein family HMM PF02637. | Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family. | 0.508 |
| DVU_1791 | rpoD | DVU_1791 | DVU_1788 | Identified by match to protein family HMM PF02637. | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth; Belongs to the sigma-70 factor family. RpoD/SigA subfamily. | 0.722 |
| DVU_1791 | rpsO | DVU_1791 | DVU_0504 | Identified by match to protein family HMM PF02637. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.682 |
| DVU_1791 | rpsU | DVU_1791 | DVU_1792 | Identified by match to protein family HMM PF02637. | Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family. | 0.960 |
| dnaG | DVU_1787 | DVU_1789 | DVU_1787 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Nuclease domain protein; Identified by match to protein family HMM PF00565. | 0.504 |
| dnaG | DVU_1791 | DVU_1789 | DVU_1791 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Identified by match to protein family HMM PF02637. | 0.723 |
| dnaG | mutS2 | DVU_1789 | DVU_1790 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.721 |
| dnaG | rplS | DVU_1789 | DVU_0835 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.560 |
| dnaG | rpoD | DVU_1789 | DVU_1788 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth; Belongs to the sigma-70 factor family. RpoD/SigA subfamily. | 0.991 |
| dnaG | rpsU | DVU_1789 | DVU_1792 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family. | 0.715 |
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