Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_1791 | DVU_1794 | DVU_1791 | DVU_1794 | Identified by match to protein family HMM PF02637. | Hypothetical protein; Identified by Glimmer2; putative. | 0.412 |
| DVU_1791 | DVU_1796 | DVU_1791 | DVU_1796 | Identified by match to protein family HMM PF02637. | Hypothetical protein; Identified by Glimmer2; putative. | 0.402 |
| DVU_1791 | hup-3 | DVU_1791 | DVU_1795 | Identified by match to protein family HMM PF02637. | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family. | 0.458 |
| DVU_1791 | rpsU | DVU_1791 | DVU_1792 | Identified by match to protein family HMM PF02637. | Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family. | 0.960 |
| DVU_1794 | DVU_1791 | DVU_1794 | DVU_1791 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM PF02637. | 0.412 |
| DVU_1794 | DVU_1796 | DVU_1794 | DVU_1796 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.777 |
| DVU_1794 | hup-3 | DVU_1794 | DVU_1795 | Hypothetical protein; Identified by Glimmer2; putative. | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family. | 0.801 |
| DVU_1794 | ksgA | DVU_1794 | DVU_1797 | Hypothetical protein; Identified by Glimmer2; putative. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.585 |
| DVU_1794 | rpsU | DVU_1794 | DVU_1792 | Hypothetical protein; Identified by Glimmer2; putative. | Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family. | 0.575 |
| DVU_1796 | DVU_1791 | DVU_1796 | DVU_1791 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM PF02637. | 0.402 |
| DVU_1796 | DVU_1794 | DVU_1796 | DVU_1794 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.777 |
| DVU_1796 | hup-3 | DVU_1796 | DVU_1795 | Hypothetical protein; Identified by Glimmer2; putative. | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family. | 0.793 |
| DVU_1796 | ksgA | DVU_1796 | DVU_1797 | Hypothetical protein; Identified by Glimmer2; putative. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.556 |
| DVU_1796 | rpsU | DVU_1796 | DVU_1792 | Hypothetical protein; Identified by Glimmer2; putative. | Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family. | 0.572 |
| hup-3 | DVU_1791 | DVU_1795 | DVU_1791 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family. | Identified by match to protein family HMM PF02637. | 0.458 |
| hup-3 | DVU_1794 | DVU_1795 | DVU_1794 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.801 |
| hup-3 | DVU_1796 | DVU_1795 | DVU_1796 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.793 |
| hup-3 | ksgA | DVU_1795 | DVU_1797 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.586 |
| hup-3 | rpsU | DVU_1795 | DVU_1792 | DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family. | Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family. | 0.650 |
| ksgA | DVU_1794 | DVU_1797 | DVU_1794 | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Hypothetical protein; Identified by Glimmer2; putative. | 0.585 |
page 1 of 2