Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0519 | DVU_0863 | DVU_0519 | DVU_0863 | Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; Belongs to the flagella basal body rod proteins family. | Flagellar hook-associated protein 2, putative; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.986 |
| DVU_0519 | DVU_1850 | DVU_0519 | DVU_1850 | Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; Belongs to the flagella basal body rod proteins family. | CBS domain protein; Identified by match to protein family HMM PF00571. | 0.553 |
| DVU_0863 | DVU_0519 | DVU_0863 | DVU_0519 | Flagellar hook-associated protein 2, putative; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; Belongs to the flagella basal body rod proteins family. | 0.986 |
| DVU_0863 | DVU_1850 | DVU_0863 | DVU_1850 | Flagellar hook-associated protein 2, putative; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | CBS domain protein; Identified by match to protein family HMM PF00571. | 0.554 |
| DVU_1368 | DVU_1850 | DVU_1368 | DVU_1850 | Rhodanese-like domain protein; Identified by match to protein family HMM PF00581. | CBS domain protein; Identified by match to protein family HMM PF00571. | 0.887 |
| DVU_1368 | carB | DVU_1368 | DVU_0162 | Rhodanese-like domain protein; Identified by match to protein family HMM PF00581. | Carbamoyl-phosphate synthase, large subunit; Identified by similarity to SP:P00968; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369. | 0.505 |
| DVU_1368 | guaA | DVU_1368 | DVU_1043 | Rhodanese-like domain protein; Identified by match to protein family HMM PF00581. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.596 |
| DVU_1368 | ribAB | DVU_1368 | DVU_1199 | Rhodanese-like domain protein; Identified by match to protein family HMM PF00581. | 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.450 |
| DVU_1368 | ribD | DVU_1368 | DVU_1201 | Rhodanese-like domain protein; Identified by match to protein family HMM PF00581. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.527 |
| DVU_1368 | rpoD | DVU_1368 | DVU_1788 | Rhodanese-like domain protein; Identified by match to protein family HMM PF00581. | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth; Belongs to the sigma-70 factor family. RpoD/SigA subfamily. | 0.802 |
| DVU_1850 | DVU_0519 | DVU_1850 | DVU_0519 | CBS domain protein; Identified by match to protein family HMM PF00571. | Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; Belongs to the flagella basal body rod proteins family. | 0.553 |
| DVU_1850 | DVU_0863 | DVU_1850 | DVU_0863 | CBS domain protein; Identified by match to protein family HMM PF00571. | Flagellar hook-associated protein 2, putative; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.554 |
| DVU_1850 | DVU_1368 | DVU_1850 | DVU_1368 | CBS domain protein; Identified by match to protein family HMM PF00571. | Rhodanese-like domain protein; Identified by match to protein family HMM PF00581. | 0.887 |
| DVU_1850 | DVU_1851 | DVU_1850 | DVU_1851 | CBS domain protein; Identified by match to protein family HMM PF00571. | Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551. | 0.630 |
| DVU_1850 | carB | DVU_1850 | DVU_0162 | CBS domain protein; Identified by match to protein family HMM PF00571. | Carbamoyl-phosphate synthase, large subunit; Identified by similarity to SP:P00968; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369. | 0.658 |
| DVU_1850 | guaA | DVU_1850 | DVU_1043 | CBS domain protein; Identified by match to protein family HMM PF00571. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.842 |
| DVU_1850 | pcm | DVU_1850 | DVU_1849 | CBS domain protein; Identified by match to protein family HMM PF00571. | protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. | 0.592 |
| DVU_1850 | ribAB | DVU_1850 | DVU_1199 | CBS domain protein; Identified by match to protein family HMM PF00571. | 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.552 |
| DVU_1850 | ribD | DVU_1850 | DVU_1201 | CBS domain protein; Identified by match to protein family HMM PF00571. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.540 |
| DVU_1850 | rpoD | DVU_1850 | DVU_1788 | CBS domain protein; Identified by match to protein family HMM PF00571. | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth; Belongs to the sigma-70 factor family. RpoD/SigA subfamily. | 0.768 |
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