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DVU_1877 DVU_1877 DVU_0117 DVU_0117 DVU_1892 DVU_1892 DVU_1060 DVU_1060 DVU_1061 DVU_1061 DVU_1876 DVU_1876 DVU_1252 DVU_1252 DVU_1875 DVU_1875 DVU_1879 DVU_1879 clpB clpB DVU_0635 DVU_0635
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1877Identified by match to protein family HMM PF01522. (366 aa)    
Predicted Functional Partners:
DVU_0117
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.659
DVU_1892
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.659
DVU_1060
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
  
 0.636
DVU_1061
Identified by similarity to SP:P71243; match to protein family HMM PF00534.
 
  
 0.561
DVU_1876
dnaJ protein, putative; Identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF01556.
  
    0.540
DVU_1252
Membrane protein, putative.
  
     0.509
DVU_1875
dafA protein; Identified by similarity to SP:P77527.
  
    0.475
DVU_1879
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
  
 0.445
clpB
ATP-dependent Clp protease, ATP-binding subunit ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to [...]
  
  
 0.436
DVU_0635
Identified by match to protein family HMM PF02366.
  
  
 0.435
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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