node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_1900 | mreB-1 | DVU_1900 | DVU_0789 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | Rod shape-determining protein MreB; Identified by similarity to SP:P13519; match to protein family HMM TIGR00904. | 0.872 |
DVU_1900 | mreB-2 | DVU_1900 | DVU_1681 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | Rod shape-determining protein MreB; Identified by similarity to SP:P13519; match to protein family HMM TIGR00904. | 0.846 |
DVU_1900 | pgsA | DVU_1900 | DVU_1846 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.784 |
DVU_1900 | recO | DVU_1900 | DVU_1899 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | DNA repair protein RecO, putative; Involved in DNA repair and RecF pathway recombination. | 0.800 |
DVU_1900 | rplD | DVU_1900 | DVU_1304 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.743 |
DVU_1900 | rplI | DVU_1900 | DVU_0958 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.732 |
DVU_1900 | rplV | DVU_1900 | DVU_1308 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.768 |
DVU_1900 | rplW | DVU_1900 | DVU_1305 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.777 |
DVU_1900 | rpmC | DVU_1900 | DVU_1311 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | Ribosomal protein L29; Identified by similarity to SP:P04457; match to protein family HMM PF00831; match to protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family. | 0.775 |
DVU_1900 | secA | DVU_1900 | DVU_0825 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.768 |
mreB-1 | DVU_1900 | DVU_0789 | DVU_1900 | Rod shape-determining protein MreB; Identified by similarity to SP:P13519; match to protein family HMM TIGR00904. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | 0.872 |
mreB-1 | rplD | DVU_0789 | DVU_1304 | Rod shape-determining protein MreB; Identified by similarity to SP:P13519; match to protein family HMM TIGR00904. | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.420 |
mreB-2 | DVU_1900 | DVU_1681 | DVU_1900 | Rod shape-determining protein MreB; Identified by similarity to SP:P13519; match to protein family HMM TIGR00904. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | 0.846 |
pgsA | DVU_1900 | DVU_1846 | DVU_1900 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | 0.784 |
recO | DVU_1900 | DVU_1899 | DVU_1900 | DNA repair protein RecO, putative; Involved in DNA repair and RecF pathway recombination. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | 0.800 |
rplD | DVU_1900 | DVU_1304 | DVU_1900 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03804. | 0.743 |
rplD | mreB-1 | DVU_1304 | DVU_0789 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Rod shape-determining protein MreB; Identified by similarity to SP:P13519; match to protein family HMM TIGR00904. | 0.420 |
rplD | rplI | DVU_1304 | DVU_0958 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.994 |
rplD | rplV | DVU_1304 | DVU_1308 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.999 |
rplD | rplW | DVU_1304 | DVU_1305 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |