DVU_1935 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DVU_1935

Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528. (265 aa)

Predicted Functional Partners:

phnC

0.996

DVU_1937

0.991

DVU_1934

0.980

DVU_0120

0.962

DVU_0249

0.772

DVU_1933

0.548

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0120	DVU_1934	DVU_0120	DVU_1934	ABC transporter, substrate-binding protein, putative; Identified by similarity to SP:P16682.	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	0.963
DVU_0120	DVU_1935	DVU_0120	DVU_1935	ABC transporter, substrate-binding protein, putative; Identified by similarity to SP:P16682.	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	0.962
DVU_0120	DVU_1937	DVU_0120	DVU_1937	ABC transporter, substrate-binding protein, putative; Identified by similarity to SP:P16682.	Phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative; Identified by similarity to SP:P16682.	0.975
DVU_0120	phnC	DVU_0120	DVU_1936	ABC transporter, substrate-binding protein, putative; Identified by similarity to SP:P16682.	Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.992
DVU_0249	DVU_1934	DVU_0249	DVU_1934	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSC0089.	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	0.780
DVU_0249	DVU_1935	DVU_0249	DVU_1935	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSC0089.	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	0.772
DVU_0249	DVU_1937	DVU_0249	DVU_1937	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSC0089.	Phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative; Identified by similarity to SP:P16682.	0.756
DVU_0249	phnC	DVU_0249	DVU_1936	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSC0089.	Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.895
DVU_1933	DVU_1934	DVU_1933	DVU_1934	Peptidase, PfpI family; Identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382.	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	0.541
DVU_1933	DVU_1935	DVU_1933	DVU_1935	Peptidase, PfpI family; Identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382.	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	0.548
DVU_1933	DVU_1937	DVU_1933	DVU_1937	Peptidase, PfpI family; Identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382.	Phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative; Identified by similarity to SP:P16682.	0.410
DVU_1933	phnC	DVU_1933	DVU_1936	Peptidase, PfpI family; Identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382.	Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.555
DVU_1934	DVU_0120	DVU_1934	DVU_0120	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	ABC transporter, substrate-binding protein, putative; Identified by similarity to SP:P16682.	0.963
DVU_1934	DVU_0249	DVU_1934	DVU_0249	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSC0089.	0.780
DVU_1934	DVU_1933	DVU_1934	DVU_1933	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	Peptidase, PfpI family; Identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382.	0.541
DVU_1934	DVU_1935	DVU_1934	DVU_1935	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	0.980
DVU_1934	DVU_1937	DVU_1934	DVU_1937	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	Phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative; Identified by similarity to SP:P16682.	0.991
DVU_1934	phnC	DVU_1934	DVU_1936	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.996
DVU_1935	DVU_0120	DVU_1935	DVU_0120	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	ABC transporter, substrate-binding protein, putative; Identified by similarity to SP:P16682.	0.962
DVU_1935	DVU_0249	DVU_1935	DVU_0249	Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSC0089.	0.772

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About