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DVU_1941 DVU_1941 DVU_1939 DVU_1939 DVU_1940 DVU_1940 DVU_1686 DVU_1686 DVU_1938 DVU_1938 DVU_1942 DVU_1942 DVU_1531 DVU_1531 DVU_1651 DVU_1651 metG metG lspA lspA purQ purQ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_1941HAD-superfamily hydrolase, subfamily IIA; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460. (255 aa)    
Predicted Functional Partners:
DVU_1939
Anaerobic glycerol-3-phosphate dehydrogenase, B subunit, putative; Identified by similarity to SP:P13033.
  
    0.697
DVU_1940
Anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative; Identified by similarity to SP:P13032; match to protein family HMM PF01266.
  
  
 0.691
DVU_1686
ATPase, AAA family; Identified by match to protein family HMM PF00004.
 
 
    0.679
DVU_1938
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.548
DVU_1942
Identified by match to protein family HMM PF02645; match to protein family HMM PF02734; match to protein family HMM TIGR00762.
     
 0.525
DVU_1531
Methyltransferase, putative; Identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095.
 
    0.489
DVU_1651
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00387.
   
    0.477
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
   0.472
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
    0.462
purQ
Phosphoribosylformylglycinamidine synthase I.
    
   0.438
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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