Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0047 | DVU_2007 | DVU_0047 | DVU_2007 | Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Nuclease, putative; Identified by match to protein family HMM PF00565. | 0.555 |
| DVU_0047 | fliI | DVU_0047 | DVU_0310 | Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Flagellum-specific ATP synthase FliI; Identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM TIGR01026. | 0.835 |
| DVU_1148 | DVU_2007 | DVU_1148 | DVU_2007 | Conserved hypothetical protein; Identified by similarity to GP:28202763. | Nuclease, putative; Identified by match to protein family HMM PF00565. | 0.454 |
| DVU_2006 | DVU_2007 | DVU_2006 | DVU_2007 | Hypothetical protein; Identified by Glimmer2; putative. | Nuclease, putative; Identified by match to protein family HMM PF00565. | 0.540 |
| DVU_2007 | DVU_0047 | DVU_2007 | DVU_0047 | Nuclease, putative; Identified by match to protein family HMM PF00565. | Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.555 |
| DVU_2007 | DVU_1148 | DVU_2007 | DVU_1148 | Nuclease, putative; Identified by match to protein family HMM PF00565. | Conserved hypothetical protein; Identified by similarity to GP:28202763. | 0.454 |
| DVU_2007 | DVU_2006 | DVU_2007 | DVU_2006 | Nuclease, putative; Identified by match to protein family HMM PF00565. | Hypothetical protein; Identified by Glimmer2; putative. | 0.540 |
| DVU_2007 | DVU_2008 | DVU_2007 | DVU_2008 | Nuclease, putative; Identified by match to protein family HMM PF00565. | Hypothetical protein; Identified by Glimmer2; putative. | 0.433 |
| DVU_2007 | DVU_3227 | DVU_2007 | DVU_3227 | Nuclease, putative; Identified by match to protein family HMM PF00565. | Flagellar basal body-associated protein, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.476 |
| DVU_2007 | fliI | DVU_2007 | DVU_0310 | Nuclease, putative; Identified by match to protein family HMM PF00565. | Flagellum-specific ATP synthase FliI; Identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM TIGR01026. | 0.404 |
| DVU_2007 | ribD | DVU_2007 | DVU_1201 | Nuclease, putative; Identified by match to protein family HMM PF00565. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.500 |
| DVU_2007 | rnpA | DVU_2007 | DVU_1075 | Nuclease, putative; Identified by match to protein family HMM PF00565. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.616 |
| DVU_2008 | DVU_2007 | DVU_2008 | DVU_2007 | Hypothetical protein; Identified by Glimmer2; putative. | Nuclease, putative; Identified by match to protein family HMM PF00565. | 0.433 |
| DVU_3227 | DVU_2007 | DVU_3227 | DVU_2007 | Flagellar basal body-associated protein, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Nuclease, putative; Identified by match to protein family HMM PF00565. | 0.476 |
| DVU_3227 | fliI | DVU_3227 | DVU_0310 | Flagellar basal body-associated protein, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Flagellum-specific ATP synthase FliI; Identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM TIGR01026. | 0.817 |
| fliI | DVU_0047 | DVU_0310 | DVU_0047 | Flagellum-specific ATP synthase FliI; Identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM TIGR01026. | Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.835 |
| fliI | DVU_2007 | DVU_0310 | DVU_2007 | Flagellum-specific ATP synthase FliI; Identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM TIGR01026. | Nuclease, putative; Identified by match to protein family HMM PF00565. | 0.404 |
| fliI | DVU_3227 | DVU_0310 | DVU_3227 | Flagellum-specific ATP synthase FliI; Identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM TIGR01026. | Flagellar basal body-associated protein, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.817 |
| ribD | DVU_2007 | DVU_1201 | DVU_2007 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Nuclease, putative; Identified by match to protein family HMM PF00565. | 0.500 |
| ribD | rnpA | DVU_1201 | DVU_1075 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.512 |
page 1 of 2