Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0624 | DVU_0964 | DVU_0624 | DVU_0964 | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | Identified by match to protein family HMM PF00208. | 0.900 |
| DVU_0624 | amiE | DVU_0624 | DVU_1164 | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | Aliphatic amidase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family. | 0.900 |
| DVU_0624 | glnA | DVU_0624 | DVU_3392 | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | Glutamine synthetase, type I; Identified by similarity to SP:P12425; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653. | 0.906 |
| DVU_0624 | glnN | DVU_0624 | DVU_1258 | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | Glutamine synthetase, type III; Identified by similarity to GP:9651982; match to protein family HMM PF00120; Belongs to the glutamine synthetase family. | 0.900 |
| DVU_0624 | hcp | DVU_0624 | DVU_2013 | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O; Belongs to the HCP family. | 0.914 |
| DVU_0624 | hcp-2 | DVU_0624 | DVU_2543 | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | 0.916 |
| DVU_0624 | nrfA | DVU_0624 | DVU_0625 | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | Cytochrome c nitrite reductase, catalytic subunit NfrA, putative; Catalytic subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Has both nitrite and sulfite reductase activities. Catalyzes the reduction of nitrite to ammonia, consuming six electrons acquired by the electron donor subunit NrfH from the menaquinone pool, in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced [...] | 0.999 |
| DVU_0665 | DVU_1597 | DVU_0665 | DVU_1597 | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family. | Sulfite reductase, assimilatory-type; This enzyme catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. | 0.495 |
| DVU_0665 | DVU_2014 | DVU_0665 | DVU_2014 | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family. | Identified by match to protein family HMM PF00753; In the N-terminal section; belongs to the zinc metallo- hydrolase group 3 family. | 0.753 |
| DVU_0665 | glnA | DVU_0665 | DVU_3392 | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family. | Glutamine synthetase, type I; Identified by similarity to SP:P12425; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653. | 0.584 |
| DVU_0665 | hcp | DVU_0665 | DVU_2013 | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family. | Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O; Belongs to the HCP family. | 0.628 |
| DVU_0665 | hcp-2 | DVU_0665 | DVU_2543 | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family. | Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | 0.628 |
| DVU_0665 | nrfA | DVU_0665 | DVU_0625 | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family. | Cytochrome c nitrite reductase, catalytic subunit NfrA, putative; Catalytic subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Has both nitrite and sulfite reductase activities. Catalyzes the reduction of nitrite to ammonia, consuming six electrons acquired by the electron donor subunit NrfH from the menaquinone pool, in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced [...] | 0.569 |
| DVU_0964 | DVU_0624 | DVU_0964 | DVU_0624 | Identified by match to protein family HMM PF00208. | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | 0.900 |
| DVU_0964 | amiE | DVU_0964 | DVU_1164 | Identified by match to protein family HMM PF00208. | Aliphatic amidase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family. | 0.900 |
| DVU_0964 | glnA | DVU_0964 | DVU_3392 | Identified by match to protein family HMM PF00208. | Glutamine synthetase, type I; Identified by similarity to SP:P12425; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653. | 0.916 |
| DVU_0964 | glnN | DVU_0964 | DVU_1258 | Identified by match to protein family HMM PF00208. | Glutamine synthetase, type III; Identified by similarity to GP:9651982; match to protein family HMM PF00120; Belongs to the glutamine synthetase family. | 0.901 |
| DVU_0964 | hcp | DVU_0964 | DVU_2013 | Identified by match to protein family HMM PF00208. | Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O; Belongs to the HCP family. | 0.900 |
| DVU_0964 | hcp-2 | DVU_0964 | DVU_2543 | Identified by match to protein family HMM PF00208. | Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | 0.900 |
| DVU_0964 | nrfA | DVU_0964 | DVU_0625 | Identified by match to protein family HMM PF00208. | Cytochrome c nitrite reductase, catalytic subunit NfrA, putative; Catalytic subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Has both nitrite and sulfite reductase activities. Catalyzes the reduction of nitrite to ammonia, consuming six electrons acquired by the electron donor subunit NrfH from the menaquinone pool, in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced [...] | 0.900 |
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