STRINGSTRING
DVU_2038 DVU_2038 DVU_2037 DVU_2037 DVU_2039 DVU_2039 DVU_2040 DVU_2040 DVU_2035 DVU_2035 DVU_2041 DVU_2041 DVU_2036 DVU_2036 DVU_2042 DVU_2042 DVU_2043 DVU_2043
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2038Hypothetical protein; Identified by Glimmer2; putative. (98 aa)    
Predicted Functional Partners:
DVU_2037
cobS protein, putative; Identified by similarity to SP:P29933.
  
    0.645
DVU_2039
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.580
DVU_2040
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.576
DVU_2035
Plasmid stabilization system family protein; Identified by match to protein family HMM PF05016.
       0.473
DVU_2041
Conserved hypothetical protein; Identified by similarity to GP:20095150.
  
    0.471
DVU_2036
Helix-turn-helix protein, CopG family; Identified by match to protein family HMM PF01402.
       0.458
DVU_2042
Fic family protein; Identified by match to protein family HMM PF02661.
       0.450
DVU_2043
Conserved hypothetical protein; Identified by similarity to GP:20095140.
  
    0.417
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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