STRINGSTRING
DVU_2058 DVU_2058 lysS lysS DVU_2059 DVU_2059 DVU_2060 DVU_2060 DVU_2057 DVU_2057 DVU_2062 DVU_2062 pfkA pfkA DVU_2063 DVU_2063
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2058HDIG domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277. (203 aa)    
Predicted Functional Partners:
lysS
lysyl-tRNA synthetase; Identified by similarity to SP:P41255; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.
      0.912
DVU_2059
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
    0.748
DVU_2060
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.741
DVU_2057
Conserved hypothetical protein; Identified by similarity to OMNI:EF2761; match to protein family HMM PF04468.
  
    0.527
DVU_2062
ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580.
       0.487
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. PPi-dependent PFK group II subfamily. Atypical ATP-dependent clade 'X' sub-subfamily.
  
    0.470
DVU_2063
Conserved hypothetical protein; Identified by similarity to GP:29338363.
  
    0.427
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.