STRINGSTRING
DVU_2077 DVU_2077 efp efp cheR-2 cheR-2 DVU_1902 DVU_1902 DVU_3112 DVU_3112 DVU_0902 DVU_0902 DVU_2896 DVU_2896 cheY-2 cheY-2 DVU_3201 DVU_3201 DVU_1464 DVU_1464 DVU_1447 DVU_1447
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
DVU_2077Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130. (642 aa)    
Predicted Functional Partners:
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.936
cheR-2
Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
 
  
 0.849
DVU_1902
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01YP0471.
 
   0.796
DVU_3112
TPR domain protein; Identified by match to protein family HMM PF00515.
  
 
   0.788
DVU_0902
TPR domain protein; Identified by match to protein family HMM PF00515.
 
    0.779
DVU_2896
TPR domain protein; Identified by match to protein family HMM PF00515.
 
    0.779
cheY-2
Chemotaxis protein CheY; Identified by similarity to GP:510670; match to protein family HMM PF00072.
 
    0.775
DVU_3201
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.766
DVU_1464
Identified by match to protein family HMM PF01075.
  
     0.764
DVU_1447
CgeB family protein.
  
     0.760
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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